Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3437

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11804 and 11805 are separated by 147 nucleotides11805 and 11806 are separated by 146 nucleotides mRNA_3436: 11804 - HMMPfam-Oligosaccharyltransferase subunit Ribophorin II-PF05817, at 94,407 to 97,285 11804 mRNA_3437: 11805 - K03033 PSMD3, RPN3 26S proteasome regulatory subunit N3, at 97,433 to 99,630 11805 mRNA_3438: 11806 - KOG1162 Predicted small molecule transporter, at 99,777 to 103,344 11806

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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96,495 - 11804 mRNA_3436 0.73 +0.2
96,623 - 11804 mRNA_3436 0.77 +0.3
96,894 - 11804 mRNA_3436 0.86 +0.3
96,915 - 11804 mRNA_3436 0.87 +0.5
96,930 + 11804 mRNA_3436 0.88 -0.1
97,002 - +0.8
97,080 - -0.1
97,204 + +1.3
97,358 + +0.1
97,388 + -0.2
97,412 - +0.0
99,393 + 11805 mRNA_3437 0.89 +0.3
99,712 - -0.9
99,851 + +0.2
100,033 - -0.3
100,201 + 11806 mRNA_3438 0.12 -0.1
100,203 - 11806 mRNA_3438 0.12 -0.5

Or see this region's nucleotide sequence