Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3466

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11833 and 11834 are separated by 219 nucleotides mRNA_3465: 11833 - KOG1176 Acyl-CoA synthetase, at 166,819 to 169,091 11833 mRNA_3466: 11834 - HMMPfam-Sds3-like-PF08598, at 169,311 to 170,947 11834

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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168,413 + 11833 mRNA_3465 0.70 +0.3
168,547 + 11833 mRNA_3465 0.76 +1.5
168,683 - 11833 mRNA_3465 0.82 +1.2
168,725 + 11833 mRNA_3465 0.84 -0.4
168,853 + 11833 mRNA_3465 0.89 -0.4
168,861 - 11833 mRNA_3465 0.90 -0.1
168,997 - +0.8
169,000 + +0.9
169,011 - -0.0
169,033 + +0.6
169,039 - +1.2
169,146 - +0.7
169,149 - -0.0
169,153 - -0.7
169,163 + -0.5
169,174 - +2.1
169,179 + +0.5
169,179 + -0.4
169,202 + +1.4
169,208 + +2.2
169,216 - -0.1
169,218 + +0.4
169,253 + -0.6
169,506 - 11834 mRNA_3466 0.12 -0.3
169,543 + 11834 mRNA_3466 0.14 +1.0
169,787 + 11834 mRNA_3466 0.29 +0.6
169,811 - 11834 mRNA_3466 0.31 -0.1
169,940 - 11834 mRNA_3466 0.38 -2.4
170,028 - 11834 mRNA_3466 0.44 +0.1
170,219 + 11834 mRNA_3466 0.55 +0.4
170,275 - 11834 mRNA_3466 0.59 +0.7
170,396 + 11834 mRNA_3466 0.66 +0.3

Or see this region's nucleotide sequence