Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3470

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11837 and 11838 are separated by 219 nucleotides11838 and 11839 are separated by 310 nucleotides mRNA_3469: 11837 - K07512 MECR, NRBF1 mitochondrial trans-2-enoyl-CoA reductase, at 177,477 to 179,110 11837 mRNA_3470: 11838 - KOG1492 C3H1-type Zn-finger protein, at 179,330 to 181,535 11838 mRNA_3471: 11839 - Interpro Transcription-silencing protein, cryptic loci regulator Clr2 Transcription-silencing protein Clr2, at 181,846 to 184,835 11839

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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178,347 - 11837 mRNA_3469 0.53 -0.4
178,533 - 11837 mRNA_3469 0.65 +0.8
178,533 + 11837 mRNA_3469 0.65 -0.0
178,545 + 11837 mRNA_3469 0.65 -0.0
178,794 + 11837 mRNA_3469 0.81 -0.1
179,240 + +0.1
179,362 + -0.1
179,366 - -0.3
179,389 + -0.1
179,390 - +0.4
179,519 - +0.7
179,554 + 11838 mRNA_3470 0.10 +1.2
180,520 + 11838 mRNA_3470 0.54 +0.4
180,563 + 11838 mRNA_3470 0.56 -1.9
180,750 + 11838 mRNA_3470 0.64 +0.5
181,131 + 11838 mRNA_3470 0.82 -1.9
181,582 - -0.8
181,716 - +1.1
181,869 - +0.8
181,895 + +0.4
182,180 + 11839 mRNA_3471 0.11 +0.7
182,183 - 11839 mRNA_3471 0.11 +2.8
182,191 - 11839 mRNA_3471 0.12 +0.3
182,192 - 11839 mRNA_3471 0.12 +0.1
182,243 - 11839 mRNA_3471 0.13 -0.1
182,312 + 11839 mRNA_3471 0.16 +0.8
182,326 + 11839 mRNA_3471 0.16 +0.5
182,342 + 11839 mRNA_3471 0.17 -0.4

Or see this region's nucleotide sequence