Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3474

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11841 and 11842 are separated by 356 nucleotides11842 and 11843 are separated by 418 nucleotides mRNA_3473: 11841 - K11578 ZW10, DSL1 protein transport protein DSL1/ZW10, at 186,960 to 196,280 11841 mRNA_3474: 11842 - HMMPfam-Protein of unknown function (DUF667)-PF05018, at 196,637 to 197,393 11842 mRNA_3475: 11843 - Hypothetical Protein, at 197,812 to 198,060 11843

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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195,884 - +2.3
196,137 - +0.5
196,271 + -0.0
196,455 + +1.3
196,991 - 11842 mRNA_3474 0.47 +1.6
197,204 + 11842 mRNA_3474 0.75 -0.9
197,326 - +0.8
197,750 + -0.1

Or see this region's nucleotide sequence