Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3564

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11931 and 11932 are separated by 616 nucleotides11932 and 11933 are separated by 427 nucleotides mRNA_3563: 11931 - Hypothetical Protein, at 61,951 to 62,967 11931 mRNA_3564: 11932 - Hypothetical Protein, at 63,584 to 64,390 11932 mRNA_3565: 11933 - KOG0254 Predicted transporter (major facilitator superfamily), at 64,818 to 67,834 11933

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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62,588 + 11931 mRNA_3563 0.63 +0.2
62,601 + 11931 mRNA_3563 0.64 +0.1
62,894 + -1.9
63,002 + +0.2
63,003 - +1.0
63,020 + +1.9
63,026 + +0.1
63,044 - +0.3
63,504 + +1.3
63,533 + -0.4
63,625 + -0.1
63,645 + +2.1
63,646 - +0.3
63,691 - 11932 mRNA_3564 0.13 +0.1
63,696 + 11932 mRNA_3564 0.14 +0.6
63,696 + 11932 mRNA_3564 0.14 -0.1
63,735 + 11932 mRNA_3564 0.19 -0.1
63,744 + 11932 mRNA_3564 0.20 +0.4
63,758 + 11932 mRNA_3564 0.22 -0.4
63,758 - 11932 mRNA_3564 0.22 +0.9
63,778 - 11932 mRNA_3564 0.24 +0.6
63,780 - 11932 mRNA_3564 0.24 -0.0
63,795 + 11932 mRNA_3564 0.26 +0.4
63,796 - 11932 mRNA_3564 0.26 +0.4
63,809 - 11932 mRNA_3564 0.28 +0.3
63,817 + 11932 mRNA_3564 0.29 -0.2
63,826 + 11932 mRNA_3564 0.30 +1.1
63,842 - 11932 mRNA_3564 0.32 +0.2
63,850 + 11932 mRNA_3564 0.33 +0.1
63,914 - 11932 mRNA_3564 0.41 +0.4
63,982 - 11932 mRNA_3564 0.49 +0.2
63,992 - 11932 mRNA_3564 0.51 +2.0
63,996 - 11932 mRNA_3564 0.51 +1.5
63,998 + 11932 mRNA_3564 0.51 +0.0
64,015 + 11932 mRNA_3564 0.53 +1.2
64,058 + 11932 mRNA_3564 0.59 +0.9
64,095 + 11932 mRNA_3564 0.63 +1.9
64,132 - 11932 mRNA_3564 0.68 +2.3
64,239 - 11932 mRNA_3564 0.81 +0.1
64,242 - 11932 mRNA_3564 0.82 -0.8
64,252 + 11932 mRNA_3564 0.83 +0.3
64,267 + 11932 mRNA_3564 0.85 -0.2
64,298 - 11932 mRNA_3564 0.88 -0.4
64,362 - +1.9
64,392 - +0.0
64,403 - -1.7
64,416 - +0.5
64,425 - +0.7
64,518 + +1.1
64,528 + -0.5
64,575 + +0.6
64,658 + -0.2
64,699 + +0.6
64,730 + +0.6
64,733 - +0.7
64,756 - -0.0
65,032 + -2.4
65,051 + -0.5
65,056 + -1.5
65,205 - 11933 mRNA_3565 0.13 -1.8
65,389 - 11933 mRNA_3565 0.19 +0.5

Or see this region's nucleotide sequence