Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3585

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11952 and 11953 are separated by 731 nucleotides mRNA_3584: 11952 - K00122 FDH formate dehydrogenase, at 104,607 to 106,241 11952 mRNA_3585: 11953 - KOG1339 Aspartyl protease, at 106,973 to 108,703 11953

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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106,048 - 11952 mRNA_3584 0.88 +0.2
106,160 - +0.1
106,325 - +0.6
106,343 - +0.8
106,344 - -0.7
106,348 + -0.0
106,352 - +2.4
106,359 + +1.9
106,362 + +0.8
106,362 + +0.3
106,373 - +2.0
106,379 + +0.7
106,380 + -0.1
106,388 + -0.2
106,397 + +2.2
106,400 - +0.8
106,412 + +0.1
106,412 - -0.3
106,416 + +1.1
106,417 + +1.7
106,441 - -0.6
106,445 + -0.8
106,459 - +0.6
106,489 + +0.6
106,490 - +1.0
106,500 - +2.3
106,505 - -0.5
106,507 + +2.0
106,511 - -0.4
106,519 + -1.6
106,541 - -0.0
106,542 + +0.0
106,555 + +0.1
106,654 + +0.9
106,799 - -1.3
106,808 - -1.8
106,822 + -0.0
107,061 - -0.9
107,107 + +0.0
107,365 - 11953 mRNA_3585 0.23 +1.3
108,019 + 11953 mRNA_3585 0.60 -0.3
108,816 - -1.3
108,824 + +1.1
108,860 - -0.5
109,033 + -0.6
109,088 + -0.6
109,101 - -0.3
109,112 - -0.3
109,132 - +0.3
109,191 + +1.1
109,232 + -0.1
109,253 - +1.0
109,262 - -0.6
109,360 + -0.1
109,398 - +0.3
109,398 + +0.0
109,403 + +0.0
109,410 - +1.7
109,414 + +0.7
109,432 - +2.0
109,468 - +0.8
109,470 - +0.2
109,477 + +1.1
109,547 + +1.2
109,567 + -0.1
109,574 - -0.5
109,577 + -1.1
109,585 - +0.3
109,586 - +0.8
109,623 - +0.3
109,646 + +2.1
109,666 - -0.1

Or see this region's nucleotide sequence