Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3612

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11978 and 11979 are separated by 98 nucleotides11979 and 11980 are separated by 28 nucleotides11980 and 11981 are separated by 144 nucleotides mRNA_3610: 11978 - K09567 PPIH, CYPH peptidyl-prolyl isomerase H (cyclophilin H), at 164,681 to 165,477 11978 mRNA_3611: 11979 - Hypothetical Protein, at 165,576 to 165,896 11979 mRNA_3612: 11980 - Hypothetical Protein, at 165,925 to 166,786 11980 mRNA_3613: 11981 - K09518 DNAJB12 DnaJ homolog subfamily B member 12, at 166,931 to 168,714 11981

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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165,672 - 11979 mRNA_3611 0.30 -1.1
165,674 - 11979 mRNA_3611 0.31 +0.0
165,781 + 11979 mRNA_3611 0.64 +1.1
165,829 + 11979 mRNA_3611 0.79 -1.6
165,845 - 11979 mRNA_3611 0.84 +0.9
165,959 - -1.5
165,966 + -0.1
166,111 - 11980 mRNA_3612 0.22 -2.1
166,253 - 11980 mRNA_3612 0.38 +0.1
166,526 + 11980 mRNA_3612 0.70 -0.7
166,548 - 11980 mRNA_3612 0.72 +0.9
166,652 + 11980 mRNA_3612 0.84 +0.3
166,659 + 11980 mRNA_3612 0.85 +0.4
166,672 + 11980 mRNA_3612 0.87 -0.9
166,679 + 11980 mRNA_3612 0.87 +0.9
166,696 + 11980 mRNA_3612 0.89 -0.6
166,838 + -1.3
166,842 - +1.4
166,855 - -0.5
166,932 + -0.8
166,954 - +0.1
166,963 + +1.4
167,121 - 11981 mRNA_3613 0.11 +0.7
167,140 + 11981 mRNA_3613 0.12 +0.7
167,251 - 11981 mRNA_3613 0.18 +0.3

Or see this region's nucleotide sequence