Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3621

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11988 and 11989 are separated by 183 nucleotides11989 and 11990 are separated by 534 nucleotides mRNA_3620: 11988 - K15777 DOPA 4,5-DOPA dioxygenase extradiol, at 181,762 to 183,020 11988 mRNA_3621: 11989 - K00252 GCDH, gcdH glutaryl-CoA dehydrogenase, at 183,204 to 185,483 11989 mRNA_3622: 11990 - KOG0254 Predicted transporter (major facilitator superfamily), at 186,018 to 188,381 11990

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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182,441 - 11988 mRNA_3620 0.54 +0.9
182,732 - 11988 mRNA_3620 0.77 +0.0
182,749 + 11988 mRNA_3620 0.78 -0.2
183,188 - +1.5
184,784 - 11989 mRNA_3621 0.69 +1.2
184,787 - 11989 mRNA_3621 0.69 -0.0
185,231 - 11989 mRNA_3621 0.89 -0.7
185,249 + 11989 mRNA_3621 0.90 -0.9
185,400 + +0.6
185,410 + +0.6
185,523 - +2.0
185,533 - +0.8
185,533 - +2.3
185,548 - +0.4
185,548 - -0.2
185,549 - +0.8
185,553 + +0.2
185,560 + -1.3
185,564 + +0.2
185,565 - +0.2
185,567 - -0.3
185,568 + -2.1
185,570 - +0.5
185,578 + +0.2
185,578 + +0.1
185,593 - +2.5
185,593 - +2.4
185,593 - -1.0
185,594 + -0.1
185,596 + +0.0
185,601 + +1.8
185,649 - -0.4
185,661 - -0.0
185,661 - -0.2
185,662 + -0.0
185,662 + +3.0
185,666 + +0.7
185,673 - -0.8
185,677 - -1.2
185,679 + -1.9
185,696 + -0.0
185,704 + -1.0
185,712 - -0.9
185,713 + +1.3
185,727 + -0.3
185,744 - +1.0
185,763 + +0.6
185,786 - +0.2
185,816 + -0.0
185,830 + -1.0
185,833 - +0.6
185,852 - +0.1
185,855 + -0.4
185,877 + +2.1
185,885 + +0.2
185,888 + +0.2
185,888 + -0.0
185,912 - +0.9
185,920 + +2.5
185,948 + -0.0
185,963 - +0.8
185,978 - +0.9
185,979 + +0.9
185,989 + -0.0
186,026 + -0.1
186,029 + -0.8
186,122 + -0.5
186,164 - -0.3
186,196 + +0.2
186,301 - 11990 mRNA_3622 0.12 -0.3
186,328 - 11990 mRNA_3622 0.13 +0.2
186,349 - 11990 mRNA_3622 0.14 -0.6
186,378 - 11990 mRNA_3622 0.15 +0.3

Or see this region's nucleotide sequence