Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3633

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12001 and 12002 are separated by 409 nucleotides mRNA_3633: 12001 - KOG1074 Transcriptional repressor SALM, at 211,047 to 213,295 12001 mRNA_3634: 12002 - KOG2456 Aldehyde dehydrogenase, at 213,705 to 215,567 12002

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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210,092 - -1.1
210,261 + -0.4
210,951 - +0.7
211,119 - +0.5
211,809 - 12001 mRNA_3633 0.34 -0.3
211,831 + 12001 mRNA_3633 0.35 -0.5
212,475 + 12001 mRNA_3633 0.63 +0.2
212,502 + 12001 mRNA_3633 0.65 -0.1
212,740 + 12001 mRNA_3633 0.75 +0.4
212,828 + 12001 mRNA_3633 0.79 -0.4
213,027 - 12001 mRNA_3633 0.88 +0.1
213,304 - +0.7
213,430 - -1.2
213,771 + +0.5
214,018 - 12002 mRNA_3634 0.17 +0.6
214,027 + 12002 mRNA_3634 0.17 -0.4
214,047 + 12002 mRNA_3634 0.18 +0.8
214,070 + 12002 mRNA_3634 0.20 -0.1
214,266 + 12002 mRNA_3634 0.30 -0.9

Or see this region's nucleotide sequence