Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3671

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12038 and 12039 are separated by 314 nucleotides12039 and 12040 are separated by 248 nucleotides mRNA_3670: 12038 - HMMPfam-GRIP-related Arf-binding domain-PF10375,ProSiteProfiles-GRIP domain profile.-PS50913, at 307,029 to 308,993 12038 mRNA_3671: 12039 - K07562 NMD3 nonsense-mediated mRNA decay protein 3, at 309,308 to 311,181 12039 mRNA_3672: 12040 - BLAST putative ribonuclease mrp protein subunit rmp1 [Diapo..., at 311,430 to 311,771 12040

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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308,872 + -0.1
309,046 - -0.1
309,047 - -0.1
311,239 + -0.1
311,239 - -0.2
311,357 - +3.2
311,375 + +0.1
311,387 - +0.0
311,387 + -1.5
311,394 - -0.4
311,397 - -0.2
311,400 + +0.4
311,416 + +0.2
311,423 + +3.4

Or see this region's nucleotide sequence