Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3699

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12066 and 12067 are separated by 151 nucleotides12067 and 12068 are separated by 278 nucleotides mRNA_3698: 12066 - K10428 DCTN6 dynactin 6, at 385,583 to 386,475 12066 mRNA_3699: 12067 - KOG0870 DNA polymerase epsilon, subunit D, at 386,627 to 387,665 12067 mRNA_3700: 12068 - K03020 RPC19, POLR1D DNA-directed RNA polymerases I and III subunit RPAC2, at 387,944 to 388,740 12068

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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386,745 - 12067 mRNA_3699 0.11 +1.5
386,843 + 12067 mRNA_3699 0.21 +1.0
387,133 - 12067 mRNA_3699 0.49 +1.3
387,134 - 12067 mRNA_3699 0.49 +0.8
387,261 - 12067 mRNA_3699 0.61 +2.8
387,713 + -1.9
387,745 - +1.2
387,876 + +0.6
388,030 + 12068 mRNA_3700 0.11 +0.4
388,030 - 12068 mRNA_3700 0.11 +0.0

Or see this region's nucleotide sequence