Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3701

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12068 and 12069 are separated by 348 nucleotides12069 and 12070 are separated by 351 nucleotides mRNA_3700: 12068 - K03020 RPC19, POLR1D DNA-directed RNA polymerases I and III subunit RPAC2, at 387,944 to 388,740 12068 mRNA_3701: 12069 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 389,089 to 390,202 12069 mRNA_3702: 12070 - HMMPfam-Inner centromere protein, ARK binding region-PF03941, at 390,554 to 394,764 12070

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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388,774 + -0.5
388,777 + -1.3
388,784 - -0.9
388,897 + +1.1
388,899 + +0.0
388,908 + +0.1
388,914 + +0.1
388,927 - +0.4
388,934 - -0.2
389,054 - -0.2
389,054 - -0.9
389,093 - +0.5
389,205 + 12069 mRNA_3701 0.10 +0.2
389,223 + 12069 mRNA_3701 0.12 +0.5
389,621 - 12069 mRNA_3701 0.48 -0.4
389,961 + 12069 mRNA_3701 0.78 +2.0
390,141 - +0.1
390,152 + +0.0
390,247 - -0.3
390,284 - -0.4
390,560 + +0.6

Or see this region's nucleotide sequence