Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3712

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12079 and 12080 are separated by 216 nucleotides12080 and 12081 are separated by 255 nucleotides mRNA_3711: 12079 - KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase, at 408,733 to 409,937 12079 mRNA_3712: 12080 - K00003 E1.1.1.3 homoserine dehydrogenase, at 410,154 to 411,574 12080 mRNA_3713: 12081 - KOG4756 Mitochondrial ribosomal protein L27, at 411,830 to 412,320 12081

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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409,234 + 12079 mRNA_3711 0.42 +0.6
409,240 - 12079 mRNA_3711 0.42 +0.9
409,373 + 12079 mRNA_3711 0.53 +0.9
409,574 + 12079 mRNA_3711 0.70 -0.1
409,676 + 12079 mRNA_3711 0.78 -0.4
409,844 - +0.2
411,630 + +1.3
411,636 - -0.6
411,645 - -0.1
411,772 + -0.6
411,776 + +0.4
411,788 + -0.2
412,370 + +0.6
412,517 - +1.3
412,520 - +1.2
412,520 - +1.4

Or see this region's nucleotide sequence