Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3727

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12094 and 12095 are separated by 484 nucleotides12095 and 12096 are separated by 73 nucleotides mRNA_3726: 12094 - K04082 hscB, HSCB, HSC20 molecular chaperone HscB, at 438,498 to 439,465 12094 mRNA_3727: 12095 - SMART-Leucine rich repeat, ribonuclease inhibitor type-SM00368,SUPERFAMILY--SSF52047, at 439,950 to 441,597 12095 mRNA_3728: 12096 - K11142 LAP3 cytosol aminopeptidase, at 441,671 to 443,858 12096

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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439,417 - +0.6
439,593 - -0.4
439,597 + -0.5
439,642 + +1.1
439,683 - +1.2
439,704 - +1.0
439,736 + +1.0
439,736 - +1.3
439,743 - -0.0
439,754 - +1.3
439,757 - -0.2
439,874 - +0.2
439,924 + +0.2
440,213 + 12095 mRNA_3727 0.16 +0.4
440,657 + 12095 mRNA_3727 0.43 -0.1
441,534 + +0.2
441,537 - +0.4
442,147 + 12096 mRNA_3728 0.22 +0.7

Or see this region's nucleotide sequence