Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3742

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12109 and 12110 are separated by 566 nucleotides12110 and 12111 are separated by 310 nucleotides mRNA_3741: 12109 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 470,340 to 473,925 12109 mRNA_3742: 12110 - SMART-Parallel beta-helix repeats-SM00710,SUPERFAMILY--SSF51126, at 474,492 to 476,469 12110 mRNA_3743: 12111 - K15289 SLC35F5 solute carrier family 35, member F5, at 476,780 to 478,513 12111

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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474,092 - +0.0
474,873 - 12110 mRNA_3742 0.19 +1.1
474,940 + 12110 mRNA_3742 0.23 +1.3
474,970 - 12110 mRNA_3742 0.24 -2.2
475,237 + 12110 mRNA_3742 0.38 -0.5
475,561 + 12110 mRNA_3742 0.54 +0.5
475,797 - 12110 mRNA_3742 0.66 +0.0
476,274 + +1.8
476,501 - +1.1
476,545 + -0.9
476,550 + +0.1
476,724 - -0.2
477,006 + 12111 mRNA_3743 0.13 -0.5
477,010 + 12111 mRNA_3743 0.13 +0.3
477,031 + 12111 mRNA_3743 0.14 -0.2

Or see this region's nucleotide sequence