Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3748

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12115 and 12116 are separated by 808 nucleotides12116 and 12117 are separated by 377 nucleotides mRNA_3747: 12115 - Hypothetical Protein, at 488,754 to 489,655 12115 mRNA_3748: 12116 - K00658 DLST, sucB 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase), at 490,464 to 492,382 12116 mRNA_3749: 12117 - HMMPfam-Nuclear pore complex assembly-PF13934,SUPERFAMILY--SSF57850, at 492,760 to 497,695 12117

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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489,485 - 12115 mRNA_3747 0.81 +1.5
489,591 - +2.3
490,120 - -0.1
490,449 + +1.6
492,658 + +0.2
492,796 + +0.7
492,812 + +0.7
492,912 + +0.7
493,092 - -0.9

Or see this region's nucleotide sequence