Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3756

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12123 and 12124 are separated by 72 nucleotides12124 and 12125 are separated by 552 nucleotides mRNA_3755: 12123 - K01893 NARS, asnS asparaginyl-tRNA synthetase, at 511,333 to 513,065 12123 mRNA_3756: 12124 - HMMPfam-Protein of unknown function (DUF2665)-PF11654, at 513,138 to 513,518 12124 mRNA_3757: 12125 - Hypothetical Protein, at 514,071 to 514,868 12125

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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513,091 - +1.5
513,244 + 12124 mRNA_3756 0.28 -0.3
513,289 + 12124 mRNA_3756 0.40 +0.4
513,400 + 12124 mRNA_3756 0.69 -1.0
513,420 - 12124 mRNA_3756 0.74 +1.6
513,544 + -3.3
513,651 + +0.2
513,978 + -0.2
513,991 + -0.1
514,420 + 12125 mRNA_3757 0.44 +1.3

Or see this region's nucleotide sequence