Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3760

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12127 and 12128 are separated by 568 nucleotides12128 and 12129 are separated by 295 nucleotides mRNA_3759: 12127 - Hypothetical Protein, at 518,621 to 520,492 12127 mRNA_3760: 12128 - K10746 EXO1 exonuclease 1, at 521,061 to 522,364 12128 mRNA_3761: 12129 - K20520 DBNL, ABP1 drebrin-like protein, at 522,660 to 525,046 12129

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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520,093 - 12127 mRNA_3759 0.79 +0.8
520,100 - 12127 mRNA_3759 0.79 +3.1
520,233 - 12127 mRNA_3759 0.86 +0.6
520,243 + 12127 mRNA_3759 0.87 -1.0
520,433 - +1.4
520,713 - -0.7
520,965 - -0.3
521,233 + 12128 mRNA_3760 0.13 -0.8
521,559 + 12128 mRNA_3760 0.38 +1.6
521,619 + 12128 mRNA_3760 0.43 +0.3
521,800 + 12128 mRNA_3760 0.57 +3.0
521,862 - 12128 mRNA_3760 0.61 -0.3
522,152 + 12128 mRNA_3760 0.84 +1.3
522,257 - -0.2
522,575 + +0.9
522,594 + +0.7
522,732 - -0.1
522,868 - -0.7
522,884 + +0.2
523,214 - 12129 mRNA_3761 0.23 -2.0

Or see this region's nucleotide sequence