Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3768

Experiment: 40 hrs Median Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12135 and 12136 are separated by 173 nucleotides12136 and 12137 are separated by 195 nucleotides mRNA_3767: 12135 - KOG4535 HEAT and armadillo repeat-containing protein, at 536,936 to 539,895 12135 mRNA_3768: 12136 - HMMPfam-Protein of unknown function (DUF1275)-PF06912, at 540,069 to 541,238 12136 mRNA_3769: 12137 - K10669 TRPT1, TPT1 2'-phosphotransferase, at 541,434 to 542,462 12137

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
remove
539,315 - 12135 mRNA_3767 0.80 -0.7
539,363 - 12135 mRNA_3767 0.82 +0.6
539,478 - 12135 mRNA_3767 0.86 +1.3
539,495 + 12135 mRNA_3767 0.86 +0.1
539,791 - -0.6
539,795 + -1.3
539,801 + +0.1
539,920 - -0.9
539,934 + +0.5
540,158 - +0.3
540,198 - 12136 mRNA_3768 0.11 +1.4
540,498 + 12136 mRNA_3768 0.37 +0.3
540,656 + 12136 mRNA_3768 0.50 +0.0
540,840 + 12136 mRNA_3768 0.66 -0.1
541,380 - -0.5

Or see this region's nucleotide sequence