Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3791

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12158 and 12159 are separated by 128 nucleotides12159 and 12160 are separated by 414 nucleotides mRNA_3790: 12158 - K07151 STT3 dolichyl-diphosphooligosaccharide--protein glycosyltransferase, at 586,055 to 588,728 12158 mRNA_3791: 12159 - K00287 folA dihydrofolate reductase, at 588,857 to 589,593 12159 mRNA_3792: 12160 - K12811 DDX46, PRP5 ATP-dependent RNA helicase DDX46/PRP5, at 590,008 to 594,469 12160

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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588,639 + +0.6
589,606 + -1.4
589,615 + +1.4
589,618 - +0.8
589,618 - +0.1
589,621 - -0.7
589,627 - -0.7
589,634 - +0.1
589,636 + -0.4
589,660 + +0.5
589,926 - -0.4
589,940 + -1.2

Or see this region's nucleotide sequence