Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3837

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12205 and 12206 are separated by 345 nucleotides mRNA_3837: 12205 - K01044 CES1 carboxylesterase 1, at 704,391 to 706,480 12205 mRNA_3838: 12206 - HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961, at 706,826 to 713,191 12206

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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703,452 + +0.1
703,766 + -0.6
703,875 - +0.2
703,893 + +1.1
703,896 + -0.5
703,906 + -1.8
703,909 - -0.7
704,188 + +1.6
704,242 - +0.4
704,347 + -0.8
704,385 - -0.2
704,489 + -0.0
704,616 - 12205 mRNA_3837 0.11 +1.3
704,653 - 12205 mRNA_3837 0.13 +0.5
704,802 + 12205 mRNA_3837 0.20 +0.7
705,061 + 12205 mRNA_3837 0.32 +0.7
705,072 - 12205 mRNA_3837 0.33 +0.5
705,152 + 12205 mRNA_3837 0.36 -0.1
705,196 + 12205 mRNA_3837 0.39 +0.6
705,896 - 12205 mRNA_3837 0.72 -1.2
706,398 + +0.8
706,494 - +0.2
707,153 - +0.8

Or see this region's nucleotide sequence