Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3849

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12216 and 12217 are separated by 360 nucleotides mRNA_3848: 12216 - KOG1817 Ribonuclease, at 733,873 to 734,892 12216 mRNA_3849: 12217 - Hypothetical Protein, at 735,253 to 736,177 12217

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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734,261 - 12216 mRNA_3848 0.38 +2.5
734,439 - 12216 mRNA_3848 0.55 +1.0
734,683 + 12216 mRNA_3848 0.79 +2.1
734,797 + +0.5
734,841 + +0.7
734,982 - -0.8
735,148 + +0.4
735,170 - -2.3
735,180 + +0.2
735,237 - +1.4
735,274 + -0.3
735,304 - +2.1
735,310 + +1.6
735,312 + -0.1
735,314 + +0.7
735,317 - -0.5
735,327 - -0.2
735,370 - 12217 mRNA_3849 0.13 +0.5
735,396 - 12217 mRNA_3849 0.15 +0.2
735,438 - 12217 mRNA_3849 0.20 +1.3
735,446 + 12217 mRNA_3849 0.21 +1.1
735,456 + 12217 mRNA_3849 0.22 +0.9
735,500 + 12217 mRNA_3849 0.27 -0.1
735,518 - 12217 mRNA_3849 0.29 -0.3
735,521 + 12217 mRNA_3849 0.29 -0.1
735,568 + 12217 mRNA_3849 0.34 +0.4
735,590 - 12217 mRNA_3849 0.36 +2.2
735,605 + 12217 mRNA_3849 0.38 +0.4
735,612 + 12217 mRNA_3849 0.39 +2.4
735,626 + 12217 mRNA_3849 0.40 -0.5
735,668 + 12217 mRNA_3849 0.45 +0.2
735,701 + 12217 mRNA_3849 0.48 +0.1
735,715 + 12217 mRNA_3849 0.50 -0.5
735,794 + 12217 mRNA_3849 0.58 -0.8
735,815 - 12217 mRNA_3849 0.61 +0.6
735,862 - 12217 mRNA_3849 0.66 +0.1
735,900 + 12217 mRNA_3849 0.70 +1.2
735,901 + 12217 mRNA_3849 0.70 -0.7
735,906 - 12217 mRNA_3849 0.71 -0.5
735,925 - 12217 mRNA_3849 0.73 -0.8
735,969 - 12217 mRNA_3849 0.77 +0.0
735,999 - 12217 mRNA_3849 0.81 -0.7
736,031 + 12217 mRNA_3849 0.84 +0.4
736,042 - 12217 mRNA_3849 0.85 +0.2
736,082 + 12217 mRNA_3849 0.90 -0.3
736,101 + -0.0
736,224 + -0.3
736,231 - +0.3
736,346 - +1.6
736,370 + -0.4
736,390 + +0.1
736,818 + +1.1
736,953 + -1.0
736,966 - -0.5
737,098 + +0.1
737,106 + -1.5
737,111 + +0.9
737,129 + -0.7
737,131 + +0.8

Or see this region's nucleotide sequence