Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3864

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12231 and 12232 are separated by 305 nucleotides mRNA_3863: 12231 - KOG1434 Meiotic recombination protein Dmc1, at 769,821 to 771,118 12231 mRNA_3864: 12232 - K08737 MSH6 DNA mismatch repair protein MSH6, at 771,424 to 775,679 12232

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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770,795 - 12231 mRNA_3863 0.75 +0.6
770,994 - +0.3
771,394 - -0.7
771,430 + +1.7
771,542 + +0.5
771,549 - +0.6
771,550 - +1.2
771,602 + +0.8
771,616 + +0.5
771,720 - +0.4
771,862 + 12232 mRNA_3864 0.10 -1.0
772,017 + 12232 mRNA_3864 0.14 +0.7
772,128 + 12232 mRNA_3864 0.17 +0.5
772,209 - 12232 mRNA_3864 0.18 -0.3
772,306 - 12232 mRNA_3864 0.21 +1.0
772,354 - 12232 mRNA_3864 0.22 +0.9
772,355 + 12232 mRNA_3864 0.22 -0.7
772,487 + 12232 mRNA_3864 0.25 -0.9
772,634 - 12232 mRNA_3864 0.28 +0.1
772,643 + 12232 mRNA_3864 0.29 -1.6
772,657 + 12232 mRNA_3864 0.29 +0.7
772,745 - 12232 mRNA_3864 0.31 +2.0
772,866 + 12232 mRNA_3864 0.34 +1.6
772,973 + 12232 mRNA_3864 0.36 -1.1
772,981 + 12232 mRNA_3864 0.37 +1.7
772,988 + 12232 mRNA_3864 0.37 +0.3
773,051 + 12232 mRNA_3864 0.38 +0.0
773,051 + 12232 mRNA_3864 0.38 -0.4
773,273 - 12232 mRNA_3864 0.43 -0.3
773,370 + 12232 mRNA_3864 0.46 +1.4
773,378 + 12232 mRNA_3864 0.46 -0.4
773,483 - 12232 mRNA_3864 0.48 +1.4
773,504 + 12232 mRNA_3864 0.49 -0.1
773,662 + 12232 mRNA_3864 0.53 +0.2
773,662 + 12232 mRNA_3864 0.53 -0.3
773,771 - 12232 mRNA_3864 0.55 +1.5
773,801 + 12232 mRNA_3864 0.56 -0.2
773,869 - 12232 mRNA_3864 0.57 +0.5
773,968 - 12232 mRNA_3864 0.60 +0.3
774,049 + 12232 mRNA_3864 0.62 +1.9
774,083 - 12232 mRNA_3864 0.62 -0.0
774,231 - 12232 mRNA_3864 0.66 -0.3
774,250 + 12232 mRNA_3864 0.66 +0.1
774,250 + 12232 mRNA_3864 0.66 +0.5
774,359 + 12232 mRNA_3864 0.69 -0.7
774,360 - 12232 mRNA_3864 0.69 +2.7
774,796 - 12232 mRNA_3864 0.79 +0.5
774,902 + 12232 mRNA_3864 0.82 +1.8
774,957 - 12232 mRNA_3864 0.83 +1.8
775,053 + 12232 mRNA_3864 0.85 -0.8
775,089 - 12232 mRNA_3864 0.86 +1.1
775,200 - 12232 mRNA_3864 0.89 +1.2
775,375 - -1.6
775,392 + -0.9
775,394 - +1.1
775,642 - +0.6
775,642 - -0.0
775,762 - +2.5
775,969 - +0.7
776,373 - +1.7
776,526 + -0.2
776,547 + +0.5
776,648 - +0.3
776,653 - +0.7
776,657 - -0.2
776,660 - +0.2
776,677 + +2.1

Or see this region's nucleotide sequence