Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3877

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12244 and 12245 are separated by 417 nucleotides mRNA_3876: 12244 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 804,740 to 806,816 12244 mRNA_3877: 12245 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 807,234 to 808,789 12245

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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806,236 - 12244 mRNA_3876 0.72 +2.7
806,239 - 12244 mRNA_3876 0.72 -1.2
806,284 - 12244 mRNA_3876 0.74 -0.7
806,517 - 12244 mRNA_3876 0.86 +0.9
806,669 - +0.3
807,109 + -0.9
809,186 - +0.1
809,194 + -1.1
809,208 - +1.2
809,215 + +1.5
809,232 + -2.1
809,355 - -0.8
809,355 - +1.3
809,387 - +1.1
809,404 + -1.0
809,511 + -0.0
809,517 - +1.2
809,519 - +1.8
809,527 - -0.1
809,529 - +0.0
809,531 - +0.0
809,535 + +0.2
809,546 - +0.8
809,548 + +2.0
809,548 + +0.2
809,556 + -0.0
809,585 - -0.3
809,586 + +0.6
809,596 - -0.3
809,726 + +0.3
809,729 + +1.2

Or see this region's nucleotide sequence