Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3897

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12264 and 12265 are separated by 172 nucleotides12265 and 12266 are separated by 787 nucleotides mRNA_3896: 12264 - BLAST F-box domain containing protein [Metarhizium maju..., at 844,807 to 845,932 12264 mRNA_3897: 12265 - K00459 ncd2, npd nitronate monooxygenase, at 846,105 to 847,395 12265 mRNA_3898: 12266 - HMMPfam-Acetyltransferase (GNAT) domain-PF13508,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 848,183 to 849,090 12266

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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845,136 - 12264 mRNA_3896 0.29 +1.4
845,300 - 12264 mRNA_3896 0.44 -0.6
845,431 + 12264 mRNA_3896 0.55 -0.3
845,696 + 12264 mRNA_3896 0.79 -0.0
845,729 + 12264 mRNA_3896 0.82 +0.6
845,812 - 12264 mRNA_3896 0.89 +0.7
845,848 + +0.7
846,204 + +2.8
846,456 - 12265 mRNA_3897 0.27 +0.1
846,595 - 12265 mRNA_3897 0.38 +0.1
847,005 + 12265 mRNA_3897 0.70 +1.1
847,323 - -0.8
847,603 - +0.5
847,605 + -1.0
847,617 + +0.3
847,745 - +0.2
847,751 - +1.7
847,756 - -1.4
847,756 + -0.4
847,763 - +0.4
847,769 + -0.4
847,772 + -0.8
847,777 - +1.7
847,787 + +0.1
847,791 + +3.0
847,803 - +0.6
847,825 + +1.5
847,831 - +0.4
847,886 + -4.3
847,905 - +0.3
847,917 - +1.5
847,931 - -0.7
847,933 + +1.3
847,984 - -1.2
848,091 - +0.4
848,310 - 12266 mRNA_3898 0.14 -0.4

Or see this region's nucleotide sequence