Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3906

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12274 and 12275 are separated by 258 nucleotides mRNA_3906: 12274 - K03495 gidA, mnmG, MTO1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme, at 865,746 to 868,815 12274 mRNA_3907: 12275 - Hypothetical Protein, at 869,074 to 869,751 12275

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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864,761 - +0.2
864,870 - +1.6
864,921 - +0.4
865,062 - +0.5
865,069 + +2.3
865,221 - -0.7
865,230 + +0.6
865,362 + +0.8
865,363 - -1.4
865,382 - +0.5
865,392 + +1.6
865,503 - +1.8
865,505 + +2.2
865,517 + +0.3
865,525 + -0.4
865,526 - +1.0
865,695 - -0.6
866,320 - 12274 mRNA_3906 0.19 +1.2
866,400 - 12274 mRNA_3906 0.21 +1.8
866,668 + 12274 mRNA_3906 0.30 +0.2
867,124 + 12274 mRNA_3906 0.45 +1.2
867,664 + 12274 mRNA_3906 0.62 +0.8
867,832 + 12274 mRNA_3906 0.68 +1.6
868,276 + 12274 mRNA_3906 0.82 -0.1
868,299 - 12274 mRNA_3906 0.83 +3.7
868,418 - 12274 mRNA_3906 0.87 -0.1
868,555 + +1.9
868,690 - +0.6
868,702 + +0.9
868,878 + +0.5
869,005 - +0.1
869,017 + +1.4
869,164 - 12275 mRNA_3907 0.13 +0.5
869,182 + 12275 mRNA_3907 0.16 +0.8
869,184 - 12275 mRNA_3907 0.16 +0.1
869,782 + -0.2

Or see this region's nucleotide sequence