Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3932

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12299 and 12300 are separated by 309 nucleotides12300 and 12301 are separated by 136 nucleotides mRNA_3931: 12299 - BLAST protein [Lichtheimia corymbifera JMRC-FSU-9682], at 931,506 to 935,642 12299 mRNA_3932: 12300 - K18532 AK6, FAP7 adenylate kinase, at 935,952 to 936,713 12300 mRNA_3933: 12301 - Hypothetical Protein, at 936,850 to 939,133 12301

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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935,160 + 12299 mRNA_3931 0.88 +1.0
935,176 + 12299 mRNA_3931 0.89 +1.6
935,774 + -0.0
935,945 - -0.6
936,706 + +0.1
936,819 + +0.0
936,829 + +0.1
936,839 - -0.1
937,535 - 12301 mRNA_3933 0.30 -1.8
937,693 + 12301 mRNA_3933 0.37 -2.2

Or see this region's nucleotide sequence