Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3960

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12327 and 12328 are separated by 526 nucleotides mRNA_3959: 12327 - K10401 KIF18_19 kinesin family member 18/19, at 1,000,631 to 1,004,153 12327 mRNA_3960: 12328 - K14284 NXF, TAP, MEX67 nuclear RNA export factor, at 1,004,680 to 1,007,202 12328

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,004,136 - +0.4
1,004,190 - -0.0
1,004,330 - +0.1
1,004,450 - +0.7
1,004,456 + +0.4
1,004,588 + -0.0
1,004,602 - +2.2
1,004,604 - +1.4
1,004,625 - +1.6
1,004,631 - -0.0
1,004,633 - -2.0
1,007,226 + -1.7
1,007,371 + -0.4
1,007,373 - -0.5
1,007,377 - +0.5
1,007,377 - -1.8
1,007,409 - -0.4
1,007,423 - +0.3
1,007,521 + +0.2
1,007,535 + -0.3
1,007,558 + -0.5
1,007,666 + +0.6
1,007,672 + -0.5
1,007,700 + +0.8
1,007,701 - +1.7
1,007,845 + -0.1
1,008,126 - -0.3
1,008,146 - +0.1

Or see this region's nucleotide sequence