Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4022

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12389 and 12390 are separated by 31 nucleotides12390 and 12391 are separated by 165 nucleotides mRNA_4021: 12389 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1,178,215 to 1,180,562 12389 mRNA_4022: 12390 - KOG2661 Peptidase family M48, at 1,180,594 to 1,181,890 12390 mRNA_4023: 12391 - K01061 E3.1.1.45 carboxymethylenebutenolidase, at 1,182,056 to 1,183,388 12391

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,179,605 - 12389 mRNA_4021 0.59 +0.1
1,179,612 + 12389 mRNA_4021 0.59 +1.6
1,180,191 + 12389 mRNA_4021 0.84 +0.2
1,180,778 - 12390 mRNA_4022 0.14 +1.1
1,180,806 + 12390 mRNA_4022 0.16 +2.5
1,180,835 + 12390 mRNA_4022 0.19 +0.0
1,181,590 + 12390 mRNA_4022 0.77 +1.2
1,181,677 - 12390 mRNA_4022 0.84 -0.6
1,181,957 + +0.5
1,181,960 + -0.1
1,182,117 - +0.5
1,182,253 + 12391 mRNA_4023 0.15 +0.6
1,182,253 + 12391 mRNA_4023 0.15 +0.4
1,182,848 + 12391 mRNA_4023 0.59 +0.3

Or see this region's nucleotide sequence