Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4085

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12452 and 12453 are separated by 328 nucleotides mRNA_4084: 12452 - KOG1674 Cyclin, at 1,322,887 to 1,323,848 12452 mRNA_4085: 12453 - Hypothetical Protein, at 1,324,177 to 1,324,971 12453

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,323,830 - +0.6
1,323,862 - +1.0
1,323,865 - +0.5
1,323,866 + +0.7
1,323,868 - +2.7
1,323,895 - +2.2
1,323,917 + +1.9
1,323,919 + +0.3
1,323,936 + -0.2
1,323,978 - +0.0
1,324,009 + +2.0
1,324,015 + +1.3
1,324,021 - -0.1
1,324,022 - +1.2
1,324,022 - -0.1
1,324,024 + +1.5
1,324,026 + +0.1
1,324,027 - +0.2
1,324,028 + +1.6
1,324,029 - +1.6
1,324,032 - +1.7
1,324,036 - +3.2
1,324,047 + +0.1
1,324,049 - -1.5
1,324,052 + +1.5
1,324,054 + +0.6
1,324,056 + +0.4
1,324,056 + +0.5
1,324,059 + +2.3
1,324,072 + -0.2
1,324,076 + +0.2
1,324,077 + +0.6
1,324,079 + +2.9
1,324,079 + +1.5
1,324,081 + -1.4
1,324,088 + +0.7
1,324,102 - -0.3
1,324,102 + +0.1
1,324,108 - -0.1
1,324,110 + +0.8
1,324,132 + +0.1
1,324,155 + +0.7
1,324,177 + +0.5
1,324,195 - +0.5
1,324,212 - +0.8
1,324,212 - -0.9
1,324,214 - +1.5
1,324,229 + +0.3
1,324,234 + +1.6
1,324,239 - +0.4
1,324,240 - -0.5
1,324,240 - +2.2
1,324,242 + +0.1
1,324,245 + -0.1
1,324,247 - +1.6
1,324,249 + +2.0
1,324,253 - -0.5
1,324,253 + +0.5
1,324,254 - +0.0
1,324,254 + +0.4
1,324,255 + +1.9
1,324,257 - 12453 mRNA_4085 0.10 +0.1
1,324,258 + 12453 mRNA_4085 0.10 +1.6
1,324,264 + 12453 mRNA_4085 0.11 -0.4
1,324,265 + 12453 mRNA_4085 0.11 -0.2
1,324,267 - 12453 mRNA_4085 0.11 +0.0
1,324,268 + 12453 mRNA_4085 0.11 +2.1
1,324,268 + 12453 mRNA_4085 0.11 +0.8
1,324,268 + 12453 mRNA_4085 0.11 +0.8
1,324,268 + 12453 mRNA_4085 0.11 -0.6
1,324,271 + 12453 mRNA_4085 0.12 -0.3
1,324,272 - 12453 mRNA_4085 0.12 +0.8
1,324,273 + 12453 mRNA_4085 0.12 +0.4
1,324,278 - 12453 mRNA_4085 0.13 -0.2
1,324,279 + 12453 mRNA_4085 0.13 -0.7
1,324,279 - 12453 mRNA_4085 0.13 +2.8
1,324,280 + 12453 mRNA_4085 0.13 -0.2
1,324,281 - 12453 mRNA_4085 0.13 +0.3
1,324,285 + 12453 mRNA_4085 0.14 -0.9
1,324,286 - 12453 mRNA_4085 0.14 +1.2
1,324,286 - 12453 mRNA_4085 0.14 +1.6
1,324,287 + 12453 mRNA_4085 0.14 +2.2
1,324,287 + 12453 mRNA_4085 0.14 -0.1
1,324,287 + 12453 mRNA_4085 0.14 +0.3
1,324,295 + 12453 mRNA_4085 0.15 +1.6
1,324,302 - 12453 mRNA_4085 0.16 -1.3
1,324,302 - 12453 mRNA_4085 0.16 +0.3
1,324,310 + 12453 mRNA_4085 0.17 +3.0
1,324,315 - 12453 mRNA_4085 0.17 -0.5
1,324,318 - 12453 mRNA_4085 0.18 +0.7
1,324,325 - 12453 mRNA_4085 0.19 +0.6
1,324,340 - 12453 mRNA_4085 0.21 -0.8
1,324,358 - 12453 mRNA_4085 0.23 +0.6
1,324,361 + 12453 mRNA_4085 0.23 +1.9
1,324,362 - 12453 mRNA_4085 0.23 +0.2
1,324,368 - 12453 mRNA_4085 0.24 +0.3
1,324,376 + 12453 mRNA_4085 0.25 -1.5
1,324,376 - 12453 mRNA_4085 0.25 +0.6
1,324,380 - 12453 mRNA_4085 0.26 +0.1
1,324,381 + 12453 mRNA_4085 0.26 +2.3
1,324,387 + 12453 mRNA_4085 0.26 -0.0
1,324,388 - 12453 mRNA_4085 0.27 -0.3
1,324,390 + 12453 mRNA_4085 0.27 -2.3
1,324,391 - 12453 mRNA_4085 0.27 -0.3
1,324,392 + 12453 mRNA_4085 0.27 -0.3
1,324,393 + 12453 mRNA_4085 0.27 -0.0
1,324,395 - 12453 mRNA_4085 0.27 +2.1
1,324,395 + 12453 mRNA_4085 0.27 +0.4
1,324,399 - 12453 mRNA_4085 0.28 -0.9
1,324,407 + 12453 mRNA_4085 0.29 -0.2
1,324,417 + 12453 mRNA_4085 0.30 -0.5
1,324,425 + 12453 mRNA_4085 0.31 +0.2
1,324,455 - 12453 mRNA_4085 0.35 -0.3
1,324,468 - 12453 mRNA_4085 0.37 +1.9
1,324,496 + 12453 mRNA_4085 0.40 -1.6
1,324,506 + 12453 mRNA_4085 0.41 -0.0
1,324,547 - 12453 mRNA_4085 0.47 +1.0
1,324,550 - 12453 mRNA_4085 0.47 +1.1
1,324,551 - 12453 mRNA_4085 0.47 -0.3
1,324,551 - 12453 mRNA_4085 0.47 +0.7
1,324,551 - 12453 mRNA_4085 0.47 +0.4
1,324,553 + 12453 mRNA_4085 0.47 -0.4
1,324,554 + 12453 mRNA_4085 0.47 +0.8
1,324,555 - 12453 mRNA_4085 0.48 -0.6
1,324,567 + 12453 mRNA_4085 0.49 +0.8
1,324,567 - 12453 mRNA_4085 0.49 +0.2
1,324,569 + 12453 mRNA_4085 0.49 -0.7
1,324,570 + 12453 mRNA_4085 0.49 +0.7
1,324,570 - 12453 mRNA_4085 0.49 -0.6
1,324,575 + 12453 mRNA_4085 0.50 +0.3
1,324,576 - 12453 mRNA_4085 0.50 -0.5
1,324,579 + 12453 mRNA_4085 0.51 -0.4
1,324,579 - 12453 mRNA_4085 0.51 -0.3
1,324,581 - 12453 mRNA_4085 0.51 -0.3
1,324,587 + 12453 mRNA_4085 0.52 +0.4
1,324,591 - 12453 mRNA_4085 0.52 +0.2
1,324,602 + 12453 mRNA_4085 0.53 +0.7
1,324,610 + 12453 mRNA_4085 0.54 +0.1
1,324,630 - 12453 mRNA_4085 0.57 +1.0
1,324,692 - 12453 mRNA_4085 0.65 +0.5
1,324,693 + 12453 mRNA_4085 0.65 +1.5
1,324,709 - 12453 mRNA_4085 0.67 +0.1
1,324,714 - 12453 mRNA_4085 0.68 +0.8
1,324,724 - 12453 mRNA_4085 0.69 -0.2
1,324,730 - 12453 mRNA_4085 0.70 +2.0
1,324,733 + 12453 mRNA_4085 0.70 +0.2
1,324,738 + 12453 mRNA_4085 0.71 +1.3
1,324,742 - 12453 mRNA_4085 0.71 +0.4
1,324,745 + 12453 mRNA_4085 0.71 +1.8
1,324,760 + 12453 mRNA_4085 0.73 +0.9
1,324,767 + 12453 mRNA_4085 0.74 +1.4
1,324,809 - 12453 mRNA_4085 0.79 +1.4
1,324,840 + 12453 mRNA_4085 0.83 +0.5
1,324,848 + 12453 mRNA_4085 0.84 +1.1
1,324,870 - 12453 mRNA_4085 0.87 +0.1
1,324,870 - 12453 mRNA_4085 0.87 +0.4
1,324,871 + 12453 mRNA_4085 0.87 -0.2
1,324,871 + 12453 mRNA_4085 0.87 -2.6
1,324,877 - 12453 mRNA_4085 0.88 +0.2
1,324,890 - 12453 mRNA_4085 0.90 +0.8
1,324,898 + +0.5
1,324,898 + -0.0
1,324,914 + -0.7
1,324,915 - +0.9
1,324,916 - +0.1
1,324,919 + +0.3
1,324,924 - +0.2
1,325,000 - -0.5
1,325,016 + -1.1
1,325,016 - +0.4
1,325,032 - -1.5
1,325,032 - +1.1
1,325,039 - -0.0
1,325,043 - +0.1
1,325,047 + +0.6
1,325,050 - +0.4
1,325,050 + -0.2
1,325,055 - -0.1
1,325,057 + -1.4
1,325,066 - -0.3
1,325,069 - +0.8
1,325,079 + +0.7
1,325,086 - +0.6
1,325,097 - +0.6
1,325,097 + +1.2
1,325,102 - +0.2
1,325,114 + +0.3
1,325,116 + -0.1
1,325,121 + +1.4
1,325,146 - -0.3
1,325,148 + -0.1
1,325,177 + -0.4
1,325,179 + +0.5
1,325,201 + -0.2
1,325,203 - -0.9
1,325,205 - +1.8
1,325,205 + -1.1
1,325,222 + -0.4
1,325,228 + +0.1
1,325,231 - +0.4
1,325,243 + +1.3
1,325,246 - -0.8
1,325,247 - +1.2
1,325,250 + +0.7
1,325,251 + +0.6
1,325,253 - -0.6
1,325,258 + -0.3
1,325,260 + -0.2
1,325,263 - +1.0
1,325,264 - -0.2
1,325,264 + +0.7
1,325,283 + -0.2
1,325,289 - -1.2
1,325,291 - +0.4
1,325,293 - +1.1
1,325,294 + +1.1
1,325,341 - +0.1
1,325,350 - -0.1
1,325,359 - +0.9
1,325,368 - +0.9
1,325,374 - +0.4
1,325,379 - -1.0
1,325,380 - +1.4
1,325,385 + +2.1
1,325,390 + +1.5
1,325,395 - +0.7
1,325,409 + +0.7
1,325,414 + -0.5
1,325,416 - +0.2
1,325,417 + +0.7
1,325,427 + -0.2
1,325,430 + +0.6
1,325,434 - -0.3
1,325,458 + -0.1
1,325,482 - -0.4
1,325,575 + +1.2
1,325,575 + +0.0
1,325,587 - +0.4
1,325,588 - -1.1
1,325,593 + +1.4
1,325,596 - +1.3
1,325,602 + +1.1
1,325,617 - +1.2
1,325,624 - -0.6
1,325,665 + -1.5
1,325,730 + +0.4
1,325,733 + -1.5
1,325,753 + -0.0
1,325,756 + +0.5
1,325,770 - +0.5
1,325,815 - +2.0
1,325,818 - +1.3
1,325,871 + -0.1
1,325,885 - +0.5
1,325,886 + +0.9
1,325,887 + +1.5
1,325,891 + +0.2
1,325,899 + -0.3
1,325,901 - +1.0
1,325,919 + -0.8

Or see this region's nucleotide sequence