Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4244

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12611 and 12612 are separated by 114 nucleotides12612 and 12613 are separated by 95 nucleotides mRNA_4243: 12611 - HMMPfam-F-box-like-PF12937, at 1,698,723 to 1,700,079 12611 mRNA_4244: 12612 - Hypothetical Protein, at 1,700,194 to 1,701,109 12612 mRNA_4245: 12613 - Hypothetical Protein, at 1,701,205 to 1,702,275 12613

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,699,257 + 12611 mRNA_4243 0.39 -0.2
1,699,285 - 12611 mRNA_4243 0.41 +0.6
1,699,440 - 12611 mRNA_4243 0.53 +1.2
1,699,551 - 12611 mRNA_4243 0.61 +2.0
1,700,114 + +0.9
1,700,131 + -0.2
1,700,154 + -0.4
1,700,407 + 12612 mRNA_4244 0.23 -1.3
1,700,527 - 12612 mRNA_4244 0.36 +2.2
1,700,549 - 12612 mRNA_4244 0.39 +0.9
1,700,565 + 12612 mRNA_4244 0.41 +0.5
1,700,588 - 12612 mRNA_4244 0.43 +1.7
1,700,733 + 12612 mRNA_4244 0.59 -0.7
1,700,860 + 12612 mRNA_4244 0.73 -0.9
1,701,147 + +0.1
1,701,175 + -0.1
1,701,276 + +1.4
1,701,438 - 12613 mRNA_4245 0.22 +0.3
1,701,540 - 12613 mRNA_4245 0.31 +1.9
1,701,562 - 12613 mRNA_4245 0.33 +0.3
1,701,753 - 12613 mRNA_4245 0.51 +0.6
1,701,954 - 12613 mRNA_4245 0.70 -0.4
1,702,007 + 12613 mRNA_4245 0.75 +0.2
1,702,060 - 12613 mRNA_4245 0.80 +0.2

Or see this region's nucleotide sequence