Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4263

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12630 and 12631 are separated by 164 nucleotides12631 and 12632 are separated by 413 nucleotides mRNA_4262: 12630 - KOG2688 Transcription-associated recombination protein - Thp1p, at 1,738,900 to 1,741,067 12630 mRNA_4263: 12631 - K10416 DYNC1LI, DNCLI dynein light intermediate chain 1, cytosolic, at 1,741,232 to 1,743,677 12631 mRNA_4264: 12632 - Hypothetical Protein, at 1,744,091 to 1,745,665 12632

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,740,822 - 12630 mRNA_4262 0.89 -0.2
1,742,983 + 12631 mRNA_4263 0.72 -0.5
1,744,224 + +1.1
1,744,232 + +1.4
1,744,280 + 12632 mRNA_4264 0.12 -0.1
1,744,610 + 12632 mRNA_4264 0.33 +0.3

Or see this region's nucleotide sequence