Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4269

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12636 and 12637 are separated by 989 nucleotides mRNA_4268: 12636 - K02921 RP-L37Ae, RPL37A large subunit ribosomal protein L37Ae, at 1,752,786 to 1,753,388 12636 mRNA_4269: 12637 - K15634 gpmB probable phosphoglycerate mutase, at 1,754,378 to 1,755,256 12637

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,753,829 + +1.0
1,753,840 + +1.5
1,754,102 + -0.3
1,754,109 + +0.2
1,754,121 + +0.3
1,754,233 + +0.5
1,754,240 - +0.6
1,754,245 - +0.2
1,754,245 + +2.0
1,754,247 - +2.1
1,754,250 + -0.0
1,754,385 + -0.6
1,754,400 + +0.7
1,754,678 - 12637 mRNA_4269 0.34 +0.1
1,754,711 + 12637 mRNA_4269 0.38 +0.5
1,754,822 - 12637 mRNA_4269 0.51 +1.0
1,755,205 - -0.4
1,755,272 + +0.0
1,755,672 - +0.5
1,755,989 - -0.2
1,756,238 - +0.2

Or see this region's nucleotide sequence