Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4295

Experiment: 40 hrs Median Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12662 and 12663 are separated by 204 nucleotides mRNA_4294: 12662 - K08851 TP53RK, PRPK, BUD32 TP53 regulating kinase and related kinases, at 1,823,138 to 1,824,204 12662 mRNA_4295: 12663 - K15454 PUS9 tRNA pseudouridine synthase 9, at 1,824,409 to 1,826,962 12663

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
remove
1,824,220 + +2.5
1,824,231 - +0.2
1,824,242 - +0.9
1,824,245 - +0.2
1,824,267 + +0.1
1,824,298 - +0.1
1,824,362 + -0.2
1,824,540 + +1.4
1,824,561 + +0.6
1,824,561 - -1.4
1,824,562 - +1.5
1,824,678 + 12663 mRNA_4295 0.11 +0.5
1,824,686 + 12663 mRNA_4295 0.11 -0.8
1,824,859 - 12663 mRNA_4295 0.18 +0.1
1,824,860 - 12663 mRNA_4295 0.18 -1.9
1,824,895 - 12663 mRNA_4295 0.19 +1.4
1,825,285 + 12663 mRNA_4295 0.34 +0.5
1,825,296 + 12663 mRNA_4295 0.35 -0.1
1,825,427 + 12663 mRNA_4295 0.40 +0.0
1,826,280 - 12663 mRNA_4295 0.73 +0.8
1,826,312 + 12663 mRNA_4295 0.75 -0.4
1,826,437 + 12663 mRNA_4295 0.79 -0.6
1,826,995 + -0.6
1,827,278 - -0.4
1,827,315 + -0.8
1,827,329 - +0.6
1,827,459 - +0.3
1,827,516 + -0.1
1,827,612 - +2.3
1,827,739 + +0.4
1,827,796 + +0.1
1,827,921 - +0.5
1,827,930 + +0.1

Or see this region's nucleotide sequence