Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4330

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12697 and 12698 are separated by 590 nucleotides12698 and 12699 are separated by 221 nucleotides mRNA_4329: 12697 - KOG1802 RNA helicase nonsense mRNA reducing factor (pNORF1), at 1,921,131 to 1,925,118 12697 mRNA_4330: 12698 - K18738 HEK2, KHD1 heterogeneous nuclear rnp K-like protein 2, at 1,925,709 to 1,927,416 12698 mRNA_4331: 12699 - K15262 BCP1, BCCIP protein BCP1, at 1,927,638 to 1,928,975 12699

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,925,054 + -1.7
1,925,074 - +0.9
1,925,212 + +2.2
1,925,219 + -0.4
1,925,347 + +0.3
1,925,357 + +1.8
1,925,477 + +1.2
1,926,151 - 12698 mRNA_4330 0.26 +1.1
1,926,479 - 12698 mRNA_4330 0.45 -0.2
1,926,479 - 12698 mRNA_4330 0.45 -0.0
1,926,591 + 12698 mRNA_4330 0.52 -0.4
1,927,027 + 12698 mRNA_4330 0.77 -0.7
1,927,064 - 12698 mRNA_4330 0.79 +0.8
1,927,189 - 12698 mRNA_4330 0.87 -1.2
1,927,190 + 12698 mRNA_4330 0.87 -0.3
1,927,495 - -1.9
1,927,515 - +0.4
1,927,520 + +0.2
1,927,583 + +1.3

Or see this region's nucleotide sequence