Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4335

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12702 and 12703 are separated by 202 nucleotides mRNA_4334: 12702 - K10534 NR nitrate reductase (NAD(P)H), at 1,931,652 to 1,934,999 12702 mRNA_4335: 12703 - K12620 LSM1 U6 snRNA-associated Sm-like protein LSm1, at 1,935,202 to 1,935,968 12703

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,934,217 - 12702 mRNA_4334 0.77 -0.1
1,934,647 + 12702 mRNA_4334 0.89 +2.0
1,934,651 - 12702 mRNA_4334 0.90 -0.6
1,934,810 + +0.3
1,934,934 + -0.7
1,934,966 + -0.4
1,934,977 + +1.2
1,935,083 + -0.4
1,935,094 - -0.9
1,935,105 - +1.3
1,935,110 + +0.9
1,935,114 - +0.6
1,935,134 + +2.4
1,935,969 + -0.5
1,935,981 - -0.2
1,935,992 - -1.3
1,936,004 + +1.0
1,936,106 - -1.9
1,936,114 - +0.2
1,936,140 + -1.5
1,936,273 + +0.6
1,936,292 - +2.5
1,936,295 + +1.0
1,936,446 + +0.4
1,936,539 - -0.9
1,936,572 + +0.5
1,936,572 - +0.1
1,936,579 + +0.6
1,936,594 - +0.5
1,936,735 - +0.3
1,936,781 - +0.4
1,936,862 + +2.2
1,936,879 - +0.8

Or see this region's nucleotide sequence