Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4365

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12733 and 12734 are separated by 354 nucleotides mRNA_4365: 12733 - HMMPfam-Zinc finger, C3HC4 type (RING finger)-PF13920, at 18,950 to 21,856 12733 mRNA_4366: 12734 - K11650 SMARCD SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D, at 22,211 to 24,480 12734

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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18,058 - +0.6
18,113 + +0.2
18,275 + +0.1
18,635 - +1.1
18,882 + +0.7
18,986 - +0.9
19,137 + +1.0
19,387 + 12733 mRNA_4365 0.15 -0.0
19,390 + 12733 mRNA_4365 0.15 +0.0
19,532 - 12733 mRNA_4365 0.20 +0.6
19,703 - 12733 mRNA_4365 0.26 -0.4
19,813 + 12733 mRNA_4365 0.30 +0.6
20,459 - 12733 mRNA_4365 0.52 +0.5
20,904 + 12733 mRNA_4365 0.67 -0.3
21,199 - 12733 mRNA_4365 0.77 +0.4
21,200 + 12733 mRNA_4365 0.77 +0.4
21,352 + 12733 mRNA_4365 0.83 +1.1
21,352 - 12733 mRNA_4365 0.83 +1.2
21,359 - 12733 mRNA_4365 0.83 -0.0
21,478 + 12733 mRNA_4365 0.87 +0.1
21,496 - 12733 mRNA_4365 0.88 +1.8
21,632 + +0.2
21,651 + -0.5
21,774 + -1.4
21,778 - +0.1
21,810 - +1.4
21,934 - +0.9
21,956 + +0.5
22,068 - +1.6
22,071 - +0.3
22,077 - +0.7
22,080 - +1.9
22,099 + -0.1
22,104 + +2.5
22,104 + +1.1
22,231 + +2.1
22,243 + +0.9

Or see this region's nucleotide sequence