Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4392

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12759 and 12760 overlap by 4 nucleotides12760 and 12761 are separated by 892 nucleotides mRNA_4391: 12759 - Hypothetical Protein, at 79,565 to 80,188 12759 mRNA_4392: 12760 - KOG3069 Peroxisomal NUDIX hydrolase, at 80,185 to 81,389 12760 mRNA_4393: 12761 - K00029 E1.1.1.40, maeB malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+), at 82,282 to 84,844 12761

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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79,368 + +0.7
79,638 - 12759 mRNA_4391 0.12 +1.1
79,725 - 12759 mRNA_4391 0.26 -0.9
79,792 + 12759 mRNA_4391 0.36 +1.0
80,034 + 12759 mRNA_4391 0.75 -0.3
80,318 + 12760 mRNA_4392 0.11 -0.4
80,617 - 12760 mRNA_4392 0.36 +1.5
81,192 + 12760 mRNA_4392 0.84 +1.2
81,203 - 12760 mRNA_4392 0.84 +1.4
81,342 - +1.6
81,354 - +0.1
81,367 + -0.8
81,483 + +1.4
81,504 + -1.1
81,516 + +1.4
81,524 + +0.3
81,542 - +2.6
81,646 - -0.8
81,650 - +0.6
81,655 + +0.2
81,658 - -0.2
81,661 + +0.8
81,674 - -0.7
81,699 - -0.0
81,701 - +1.0
81,701 - +1.1
81,706 + +1.3
81,709 - +0.3
81,709 - +0.2
81,710 + -0.9
81,710 + +0.6
81,716 + -0.3
81,716 + +1.4
81,727 - +1.1
81,741 + +0.9
81,759 + +0.3
81,760 - +0.9
81,760 - -0.0
81,761 - +1.7
81,762 - -0.2
81,769 - +0.1
81,773 - -1.3
81,778 - -1.6
81,784 + -1.5
81,795 - -1.0
81,849 + +1.2
81,869 + -0.1
81,886 - +0.5
81,896 - +1.6
81,898 + -0.0
81,900 - -0.1
81,911 - +1.2
81,913 - +0.6
81,924 + +2.2
81,929 + +2.0
82,077 + +2.6
82,079 + -0.1
82,079 + +0.5
82,087 + -0.7
82,096 + +3.7
82,236 - +1.1
82,243 - +0.7
82,380 - -0.6

Or see this region's nucleotide sequence