Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4394

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12761 and 12762 are separated by 201 nucleotides12762 and 12763 are separated by 505 nucleotides mRNA_4393: 12761 - K00029 E1.1.1.40, maeB malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+), at 82,282 to 84,844 12761 mRNA_4394: 12762 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 85,046 to 87,560 12762 mRNA_4395: 12763 - HMMPfam-RTA1 like protein-PF04479, at 88,066 to 89,251 12763

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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84,272 - 12761 mRNA_4393 0.78 -1.7
84,523 + 12761 mRNA_4393 0.87 -0.1
84,662 + +0.7
84,830 - -0.4
84,946 - +0.6
86,040 + 12762 mRNA_4394 0.40 +0.5
86,341 - 12762 mRNA_4394 0.51 +2.6
86,580 + 12762 mRNA_4394 0.61 +1.9
86,732 + 12762 mRNA_4394 0.67 +1.8
86,740 + 12762 mRNA_4394 0.67 +0.6
86,847 - 12762 mRNA_4394 0.72 -0.1
86,884 - 12762 mRNA_4394 0.73 +1.2
87,004 - 12762 mRNA_4394 0.78 +0.8
87,307 - 12762 mRNA_4394 0.90 -0.0
87,330 - -0.9
87,330 - -0.1
87,331 - -0.6
87,449 + -0.6
87,461 + +0.9
87,470 + -0.5
87,503 + -0.1
87,628 - +1.5
87,652 - +0.6
87,674 + +2.0
87,931 + -0.3
87,999 + +1.5
88,149 - +0.6

Or see this region's nucleotide sequence