Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4412

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12779 and 12780 are separated by 76 nucleotides12780 and 12781 are separated by 132 nucleotides mRNA_4411: 12779 - K14790 NOP9 nucleolar protein 9, at 117,633 to 120,365 12779 mRNA_4412: 12780 - SUPERFAMILY--SSF52047, at 120,442 to 126,387 12780 mRNA_4413: 12781 - KOG0252 Inorganic phosphate transporter, at 126,520 to 129,077 12781

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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120,247 + +0.4
120,320 + +1.7
120,472 + +1.9
120,509 - +1.4
120,811 + -0.7
120,955 - +2.9
120,956 - -0.0
121,062 - 12780 mRNA_4412 0.10 -0.2
121,491 - 12780 mRNA_4412 0.18 +0.9
121,645 + 12780 mRNA_4412 0.20 +0.4
121,647 + 12780 mRNA_4412 0.20 +0.8
121,731 - 12780 mRNA_4412 0.22 -0.4
121,777 - 12780 mRNA_4412 0.22 -0.3
121,864 - 12780 mRNA_4412 0.24 +1.9
121,916 - 12780 mRNA_4412 0.25 +0.9
122,015 + 12780 mRNA_4412 0.26 -0.5
122,049 - 12780 mRNA_4412 0.27 +0.3
122,059 + 12780 mRNA_4412 0.27 -0.1
122,085 - 12780 mRNA_4412 0.28 +1.1
122,096 + 12780 mRNA_4412 0.28 -0.3
122,098 + 12780 mRNA_4412 0.28 +0.8
122,211 - 12780 mRNA_4412 0.30 -0.6
122,489 - 12780 mRNA_4412 0.34 -0.1
122,621 - 12780 mRNA_4412 0.37 +0.2
122,808 + 12780 mRNA_4412 0.40 -0.2
122,988 + 12780 mRNA_4412 0.43 +0.2
123,235 + 12780 mRNA_4412 0.47 -1.0
123,280 + 12780 mRNA_4412 0.48 +0.1
123,547 + 12780 mRNA_4412 0.52 +1.4
123,571 - 12780 mRNA_4412 0.53 +0.8
123,591 + 12780 mRNA_4412 0.53 +0.6
123,715 + 12780 mRNA_4412 0.55 +1.6
123,842 + 12780 mRNA_4412 0.57 -0.3
123,862 + 12780 mRNA_4412 0.58 +1.2
123,862 + 12780 mRNA_4412 0.58 +2.0
124,015 + 12780 mRNA_4412 0.60 +0.8
124,048 + 12780 mRNA_4412 0.61 +0.2
124,099 + 12780 mRNA_4412 0.62 +3.9
124,102 - 12780 mRNA_4412 0.62 +0.1
124,116 - 12780 mRNA_4412 0.62 -0.1
124,133 - 12780 mRNA_4412 0.62 -1.0
124,177 - 12780 mRNA_4412 0.63 -0.4
124,237 - 12780 mRNA_4412 0.64 +0.0
124,280 + 12780 mRNA_4412 0.65 -0.2
124,388 - 12780 mRNA_4412 0.66 +1.4
124,388 + 12780 mRNA_4412 0.66 +0.1
124,445 - 12780 mRNA_4412 0.67 +1.1
124,539 + 12780 mRNA_4412 0.69 +2.3
124,568 - 12780 mRNA_4412 0.69 +1.4
124,626 - 12780 mRNA_4412 0.70 -0.8
124,810 + 12780 mRNA_4412 0.73 +1.2
124,865 + 12780 mRNA_4412 0.74 +0.4
125,004 + 12780 mRNA_4412 0.77 +1.6
125,016 + 12780 mRNA_4412 0.77 +1.7
125,039 - 12780 mRNA_4412 0.77 +0.2
125,039 - 12780 mRNA_4412 0.77 -1.0
125,039 - 12780 mRNA_4412 0.77 -0.2
125,045 + 12780 mRNA_4412 0.77 -0.4
125,164 + 12780 mRNA_4412 0.79 +0.2
125,795 - -1.2
125,803 + +0.1
125,806 - +1.1
125,871 + +0.8
126,051 + +0.9
126,051 - -0.1
126,057 + -1.1
126,157 - +0.2
126,240 + +1.3
126,358 + -1.1
126,492 - +1.6
126,506 + +1.7
126,527 + +2.2
126,600 - +1.8
126,817 - 12781 mRNA_4413 0.12 -1.4
126,880 + 12781 mRNA_4413 0.14 +0.0
126,957 + 12781 mRNA_4413 0.17 -0.3
127,029 + 12781 mRNA_4413 0.20 +0.3
127,209 + 12781 mRNA_4413 0.27 +0.2
127,275 + 12781 mRNA_4413 0.30 +1.9

Or see this region's nucleotide sequence