Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4461

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12828 and 12829 are separated by 368 nucleotides mRNA_4460: 12828 - SUPERFAMILY--SSF52047, at 237,623 to 238,720 12828 mRNA_4461: 12829 - SUPERFAMILY--SSF52047, at 239,089 to 240,569 12829

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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238,316 + 12828 mRNA_4460 0.63 +1.0
238,562 - 12828 mRNA_4460 0.86 -0.6
238,635 - -1.7
238,984 - +0.8
239,005 + -1.0
239,151 + +1.5
239,170 + +0.1
239,436 - 12829 mRNA_4461 0.23 +0.4
239,654 - 12829 mRNA_4461 0.38 +2.4
239,807 - 12829 mRNA_4461 0.48 -0.0
239,855 + 12829 mRNA_4461 0.52 -0.1
239,891 + 12829 mRNA_4461 0.54 +2.6
240,124 - 12829 mRNA_4461 0.70 -1.1
240,127 + 12829 mRNA_4461 0.70 +1.6
240,149 - 12829 mRNA_4461 0.72 -0.1
240,265 + 12829 mRNA_4461 0.79 +0.7
240,280 - 12829 mRNA_4461 0.80 +0.2
240,308 + 12829 mRNA_4461 0.82 +0.6
240,431 - -0.5
240,447 + -0.4
240,464 - +0.6
240,475 + +0.2
240,873 - +1.2
240,874 - +0.6
240,877 - +1.6
241,210 + -0.0
241,363 + +1.5
241,433 - -0.1
241,475 - +1.0

Or see this region's nucleotide sequence