Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4491

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12858 and 12859 are separated by 225 nucleotides12859 and 12860 are separated by 672 nucleotides mRNA_4490: 12858 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 304,461 to 305,865 12858 mRNA_4491: 12859 - Hypothetical Protein, at 306,091 to 307,232 12859 mRNA_4492: 12860 - KOG1198 Zinc-binding oxidoreductase, at 307,905 to 309,384 12860

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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305,112 + 12858 mRNA_4490 0.46 +1.6
305,263 - 12858 mRNA_4490 0.57 +1.1
305,325 - 12858 mRNA_4490 0.61 -0.3
305,721 + 12858 mRNA_4490 0.90 +0.6
305,904 - +0.8
306,298 + 12859 mRNA_4491 0.18 +1.5
306,548 - 12859 mRNA_4491 0.40 +0.6
306,586 + 12859 mRNA_4491 0.43 +0.2
306,765 + 12859 mRNA_4491 0.59 +0.5
306,812 + 12859 mRNA_4491 0.63 +0.8
307,546 - +0.6
307,687 - +0.2
307,907 + +0.4
307,918 + +1.9
307,919 + -0.1
308,052 + +0.0
308,199 - 12860 mRNA_4492 0.20 +1.2
308,205 + 12860 mRNA_4492 0.20 +0.3

Or see this region's nucleotide sequence