Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4493

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12860 and 12861 are separated by 191 nucleotides12861 and 12862 are separated by 296 nucleotides mRNA_4492: 12860 - KOG1198 Zinc-binding oxidoreductase, at 307,905 to 309,384 12860 mRNA_4493: 12861 - SUPERFAMILY--SSF52047, at 309,576 to 311,024 12861 mRNA_4494: 12862 - SUPERFAMILY--SSF52047, at 311,321 to 312,953 12862

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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308,597 + 12860 mRNA_4492 0.47 +1.3
308,736 + 12860 mRNA_4492 0.56 +0.6
308,803 - 12860 mRNA_4492 0.61 +0.2
308,898 - 12860 mRNA_4492 0.67 +0.4
308,940 + 12860 mRNA_4492 0.70 +0.7
309,032 + 12860 mRNA_4492 0.76 -0.4
309,087 + 12860 mRNA_4492 0.80 -0.3
309,227 + 12860 mRNA_4492 0.89 +0.3
309,337 + +0.4
309,499 - +2.0
309,513 - -0.3
309,636 - +2.3
309,693 + +2.2
309,766 + 12861 mRNA_4493 0.13 +0.8
310,345 - 12861 mRNA_4493 0.53 +0.2
310,463 - 12861 mRNA_4493 0.61 -0.8
310,789 - 12861 mRNA_4493 0.84 +1.4
311,111 - -0.0
311,249 + +0.2
311,565 + 12862 mRNA_4494 0.15 +1.8
311,654 - 12862 mRNA_4494 0.20 +0.9
311,734 - 12862 mRNA_4494 0.25 +1.5

Or see this region's nucleotide sequence