Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4518

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12886 and 12887 are separated by 979 nucleotides mRNA_4518: 12886 - Hypothetical Protein, at 369,280 to 370,567 12886 mRNA_4519: 12887 - Hypothetical Protein, at 371,547 to 373,000 12887

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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368,588 + +1.5
368,594 - +2.2
368,615 + -0.5
368,616 - +0.8
368,921 + +2.0
369,498 + 12886 mRNA_4518 0.17 +0.6
369,785 - 12886 mRNA_4518 0.39 -0.1
369,905 - 12886 mRNA_4518 0.49 +2.4
370,870 - -0.4
371,323 + -1.8
371,418 + +1.0

Or see this region's nucleotide sequence