Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4544

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12911 and 12912 are separated by 986 nucleotides12912 and 12913 are separated by 708 nucleotides mRNA_4543: 12911 - HMMPfam-Rrp15p-PF07890, at 422,778 to 423,805 12911 mRNA_4544: 12912 - K01251 E3.3.1.1, ahcY adenosylhomocysteinase, at 424,792 to 427,173 12912 mRNA_4545: 12913 - K11088 SNRPD3, SMD3 small nuclear ribonucleoprotein D3, at 427,882 to 428,716 12913

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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424,017 + +1.9
424,319 - +0.3
424,439 - -0.5
424,447 + +2.3
424,452 + +1.1
424,541 - +1.0
424,572 - +0.3
424,574 - +1.6
424,595 + -0.8
424,600 - -0.6
424,602 - +1.2
424,626 - -0.7
427,238 + -0.8
427,373 + -0.4
427,522 - +2.0
427,543 - -0.8

Or see this region's nucleotide sequence