Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4553

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12920 and 12921 are separated by 948 nucleotides12921 and 12922 are separated by 122 nucleotides mRNA_4552: 12920 - KOG2263 Methionine synthase II (cobalamin-independent), at 442,717 to 444,581 12920 mRNA_4553: 12921 - SUPERFAMILY--SSF81383, at 445,530 to 447,635 12921 mRNA_4554: 12922 - K12585 DIS3, RRP44 exosome complex exonuclease DIS3/RRP44, at 447,758 to 451,562 12922

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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444,561 - +0.3
444,568 + +1.3
444,864 + -0.7
444,999 - +1.4
445,002 - +0.8
445,020 - -0.2
445,029 + +2.0
445,335 + +0.5
445,652 - -0.1
445,755 + 12921 mRNA_4553 0.11 -0.5
445,757 - 12921 mRNA_4553 0.11 +0.3
445,799 - 12921 mRNA_4553 0.13 +1.2
445,913 - 12921 mRNA_4553 0.18 -0.4
446,025 + 12921 mRNA_4553 0.24 +1.7
446,396 - 12921 mRNA_4553 0.41 +0.1
446,578 - 12921 mRNA_4553 0.50 -0.5
446,953 + 12921 mRNA_4553 0.68 +0.5
446,969 + 12921 mRNA_4553 0.68 +0.5
447,121 + 12921 mRNA_4553 0.76 -0.4
447,376 - 12921 mRNA_4553 0.88 -0.4
447,401 - 12921 mRNA_4553 0.89 +0.3
447,402 + 12921 mRNA_4553 0.89 +0.8
447,418 + 12921 mRNA_4553 0.90 -0.2
447,420 - 12921 mRNA_4553 0.90 +0.6
447,420 - 12921 mRNA_4553 0.90 -0.1
447,455 - +1.3
447,476 - +0.7
447,541 - +0.8
447,553 + +0.1
447,699 - +0.2
448,004 - -0.7

Or see this region's nucleotide sequence