Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4566

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12933 and 12934 are separated by 147 nucleotides12934 and 12935 are separated by 268 nucleotides mRNA_4565: 12933 - KOG2793 Putative N2,N2-dimethylguanosine tRNA methyltransferase, at 477,682 to 479,259 12933 mRNA_4566: 12934 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 479,407 to 483,783 12934 mRNA_4567: 12935 - K10743 RNASEH2A ribonuclease H2 subunit A, at 484,052 to 485,585 12935

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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478,480 - 12933 mRNA_4565 0.51 -0.1
478,528 - 12933 mRNA_4565 0.54 +1.1
478,650 + 12933 mRNA_4565 0.61 -2.1
478,783 + 12933 mRNA_4565 0.70 +0.4
479,111 - -0.3
479,251 - -0.5
479,394 - +0.8
479,984 - 12934 mRNA_4566 0.13 +0.3
480,323 + 12934 mRNA_4566 0.21 -1.3
480,364 - 12934 mRNA_4566 0.22 +1.2
481,063 + 12934 mRNA_4566 0.38 -0.0
481,899 + 12934 mRNA_4566 0.57 -0.4
482,215 - 12934 mRNA_4566 0.64 -0.3
482,409 - 12934 mRNA_4566 0.69 -0.4
482,419 + 12934 mRNA_4566 0.69 +0.7
482,521 - 12934 mRNA_4566 0.71 -0.3
483,245 + 12934 mRNA_4566 0.88 +0.2
483,686 + -0.1
483,830 + +1.1
483,830 - +0.2
483,848 - -0.8
483,922 - +1.1
483,938 - +0.7
483,988 - +0.4
484,000 - +1.0
484,002 + -0.3
484,018 + +0.2
484,697 + 12935 mRNA_4567 0.42 +0.0

Or see this region's nucleotide sequence