Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4578

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12945 and 12946 are separated by 680 nucleotides mRNA_4577: 12945 - HMMPfam-CFEM domain-PF05730,SMART--SM00747, at 504,729 to 505,838 12945 mRNA_4578: 12946 - Hypothetical Protein, at 506,519 to 507,162 12946

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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505,586 + 12945 mRNA_4577 0.77 +1.1
505,686 + 12945 mRNA_4577 0.86 +1.0
505,727 - 12945 mRNA_4577 0.90 -0.4
505,992 - -1.0
506,054 + +1.0
506,118 + -0.3
506,141 + +0.3
506,214 - +1.9
506,231 + -0.2
506,276 + -0.3
506,277 - -0.1
506,279 - +0.0
506,304 + -0.8
506,304 + -0.9
506,306 + +0.3
506,427 + -0.4
507,192 + -0.5
507,287 - -0.2
507,337 + +1.7
507,474 + -0.4
507,613 + +0.2
507,682 + +0.5
507,721 - +0.9
507,735 + -0.1
507,751 - +0.5
507,775 - -0.4
507,779 - +0.3
507,786 - -0.0
507,800 - +0.7
507,802 - +1.9
507,802 + -0.6
507,807 + -0.1
507,946 + +1.0
507,977 - -1.1
507,990 + -1.6
507,993 - -0.2
507,994 + +0.7
507,996 + +0.8
508,007 - -1.4
508,012 + +0.6
508,033 + -0.7
508,037 + +0.5
508,039 + +0.2
508,042 - -2.1
508,052 - +0.2
508,065 + +0.2
508,084 - -0.5

Or see this region's nucleotide sequence