Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4583

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12950 and 12951 are separated by 459 nucleotides12951 and 12952 are separated by 198 nucleotides mRNA_4582: 12950 - KOG2450 Aldehyde dehydrogenase, at 517,111 to 519,102 12950 mRNA_4583: 12951 - Hypothetical Protein, at 519,562 to 522,262 12951 mRNA_4584: 12952 - KOG2217 U4/U6.U5 snRNP associated protein, at 522,461 to 526,317 12952

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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518,789 + 12950 mRNA_4582 0.84 +0.3
518,897 - 12950 mRNA_4582 0.90 -1.3
519,103 + +0.9
519,106 - +0.3
519,287 + -1.4
519,348 - -0.8
519,374 + +0.0
519,378 - +0.0
519,401 + -0.8
519,406 - -0.8
519,409 - -0.3
519,831 + -1.1
519,831 + +2.1
519,845 - 12951 mRNA_4583 0.10 +1.5
519,965 - 12951 mRNA_4583 0.15 +0.1
519,971 + 12951 mRNA_4583 0.15 -1.7
520,103 + 12951 mRNA_4583 0.20 +0.2
520,132 + 12951 mRNA_4583 0.21 -0.4
521,001 + 12951 mRNA_4583 0.53 +0.4
521,138 - 12951 mRNA_4583 0.58 -0.2
521,253 - 12951 mRNA_4583 0.63 +0.2
521,579 + 12951 mRNA_4583 0.75 +1.0
521,864 - 12951 mRNA_4583 0.85 +2.3
523,129 + 12952 mRNA_4584 0.17 -0.0
523,207 + 12952 mRNA_4584 0.19 -0.2
523,212 - 12952 mRNA_4584 0.19 +0.6

Or see this region's nucleotide sequence