Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4613

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_4613: 12981 - BLAST phospholipid-translocating ATPase [Microbotryum lychn..., at 598,191 to 598,847 12981

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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597,270 - -0.6
597,287 - +0.2
597,418 + -0.7
597,530 - +0.3
597,533 + +1.1
597,556 + -0.4
597,562 + -1.2
597,564 - +1.1
597,585 - -0.3
597,805 - -0.2
597,833 - -1.0
597,845 - +0.2
597,845 - -0.2
597,848 + -0.6
597,859 + -0.7
597,860 + -0.1
597,861 - -0.6
597,863 - -1.1
597,863 - -1.0
597,864 - +1.5
597,866 + +1.6
597,870 - +0.4
597,871 - -1.4
597,878 + -0.7
597,879 + -0.2
597,880 - -0.6
597,880 - -0.1
597,880 - +0.8
597,886 + +0.1
597,886 + +0.1
597,888 + +1.8
597,888 - +0.6
597,909 + +0.6
597,909 - +0.1
598,024 - -0.7
598,051 + -0.2
598,054 + +0.3
598,059 + -0.3
598,192 + -0.1
598,333 - 12981 mRNA_4613 0.22 -0.1
598,343 + 12981 mRNA_4613 0.23 -0.2
598,467 - 12981 mRNA_4613 0.42 -1.6
598,874 - +1.4
598,909 - -1.0
599,043 + -0.2
599,058 - +0.9
599,061 + -0.6
599,084 + +0.0
599,095 + -0.8
599,493 - -0.4
599,611 - -1.5

Or see this region's nucleotide sequence